FetB protein (Neisseria lactamica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FetB

Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)

Predicted Functional Partners:

ARB04034.1

0.982

ARB04033.1

0.981

ARB05443.1

0.977

ARB04036.1

0.528

mnmE

0.451

TbpA

0.406

Your Current Organism:

Neisseria lactamica

NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARB04033.1	ARB04034.1	B2G52_03270	B2G52_03275	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.996
ARB04033.1	ARB05443.1	B2G52_03270	B2G52_03260	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ARB04033.1	FetB	B2G52_03270	B2G52_03280	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ARB04034.1	ARB04033.1	B2G52_03275	B2G52_03270	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.996
ARB04034.1	ARB05443.1	B2G52_03275	B2G52_03260	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ARB04034.1	FetB	B2G52_03275	B2G52_03280	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ARB04036.1	FetB	B2G52_03285	B2G52_03280	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
ARB05443.1	ARB04033.1	B2G52_03260	B2G52_03270	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.994
ARB05443.1	ARB04034.1	B2G52_03260	B2G52_03275	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.980
ARB05443.1	FetB	B2G52_03260	B2G52_03280	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
FetB	ARB04033.1	B2G52_03280	B2G52_03270	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.981
FetB	ARB04034.1	B2G52_03280	B2G52_03275	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.982
FetB	ARB04036.1	B2G52_03280	B2G52_03285	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent siderophore receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.528
FetB	ARB05443.1	B2G52_03280	B2G52_03260	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
FetB	TbpA	B2G52_03280	B2G52_11305	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
FetB	mnmE	B2G52_03280	B2G52_03380	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.451
TbpA	FetB	B2G52_11305	B2G52_03280	Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
mnmE	FetB	B2G52_03380	B2G52_03280	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About