STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARB04066.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
ARB04064.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.963
ARB04063.1
Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.933
ARB04065.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.849
mlaE
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.826
por
Hypothetical protein; Serves as a slightly cation selective porin.
   
 
 0.802
ARB05445.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.651
ARB04068.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.514
ARB04069.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.499
ARB04067.1
VacJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.469
Your Current Organism:
Neisseria lactamica
NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus
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