Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARB04253.1Prepilin-type cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)    
Predicted Functional Partners:
PilC
Polyprotein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
PilN
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
pilK
Pilus assembly protein PilX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.792
pilP
Pilin assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.790
fimT
Prepilin-type cleavage/methylation domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.790
PilO
Pilus assembly protein PilO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.783
PilQ
Pilus assembly protein PilQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.765
PilM
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.764
ARB03856.1
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
ARB04486.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.751
Your Current Organism:
Neisseria lactamica
NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus
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