ARB05486.1 protein (Neisseria lactamica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Neisseria lactamica

NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARB04534.1	ARB04870.1	B2G52_06195	B2G52_08235	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
ARB04534.1	ARB05485.1	B2G52_06195	B2G52_06205	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ARB04534.1	ARB05486.1	B2G52_06195	B2G52_06210	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.990
ARB04870.1	ARB04534.1	B2G52_08235	B2G52_06195	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
ARB04870.1	ARB05485.1	B2G52_08235	B2G52_06205	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ARB04870.1	ARB05486.1	B2G52_08235	B2G52_06210	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.790
ARB05485.1	ARB04534.1	B2G52_06205	B2G52_06195	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ARB05485.1	ARB04870.1	B2G52_06205	B2G52_08235	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
ARB05485.1	ARB05486.1	B2G52_06205	B2G52_06210	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.980
ARB05486.1	ARB04534.1	B2G52_06210	B2G52_06195	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ARB05486.1	ARB04870.1	B2G52_06210	B2G52_08235	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
ARB05486.1	ARB05485.1	B2G52_06210	B2G52_06205	Restriction endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980