Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
ARB05497.1Hemin transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (566 aa)    
Predicted Functional Partners:
ARB05499.1
PspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.799
ARB04822.1
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.799
B2G52_09430
Hemin transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.799
ARB05072.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.791
B2G52_07930
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.645
ARB04723.1
DUF4810 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
ARB04724.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
ARB04722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
ARB04654.1
Toxin-activating lysine-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.499
ARB04864.1
Autotransporter outer membrane beta-barrel domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.498
Your Current Organism:
Neisseria lactamica
NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus
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