Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ARB04725.1NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)    
Predicted Functional Partners:
ARB04726.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.621
PetC
Cytochrome c1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.526
ARB04909.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.487
ARB05131.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.487
FadD
Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.487
ARB04727.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.456
sirB2
SirB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.453
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.451
ARB04722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
ARB04723.1
DUF4810 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
Your Current Organism:
Neisseria lactamica
NCBI taxonomy Id: 486
Other names: ATCC 23970, CCUG 5853, CIP 72.17, DSM 4691, N. lactamica, NCTC 10617, Neisseria lactamicus
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