STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0CRL0_LACBSPredicted protein. (754 aa)    
Predicted Functional Partners:
PAFB16201
RNA polymerase II-associated protein.
   
 0.994
B0DA69_LACBS
Predicted protein.
   
 0.972
GTC16201
Predicted protein.
   
 0.955
B0DK51_LACBS
Predicted protein.
   
 0.953
GTG16201
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.919
B0D0L9_LACBS
Predicted protein.
    
 0.910
B0D4Y9_LACBS
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.889
B0CU29_LACBS
Predicted protein.
    
 0.883
B0D9Y7_LACBS
Predicted protein.
    
 0.880
B0DKE6_LACBS
Predicted protein.
    
 0.876
Your Current Organism:
Laccaria bicolor
NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.