STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0CTC2_LACBSPredicted protein. (471 aa)    
Predicted Functional Partners:
CHR16202
SNF2 family DNA-dependent ATPase.
    
 0.738
JMJ16201
Jumonji superfamily protein.
   
 0.737
HDA16204
Histone deacetylase complex, catalytic component RPD3.
   
 0.600
HDA16202
Histone deacetylase complex, catalytic component RPD3.
   
 0.600
HDA16203
Histone deacetylase complex, catalytic component RPD3.
   
 0.600
HDA16205
Histone deacetylase complex protein.
   
 0.600
B0DFY7_LACBS
Predicted protein.
   
  
 0.569
B0DFY8_LACBS
Predicted protein.
   
  
 0.569
B0D9N2_LACBS
Predicted protein.
    
   0.530
HDA16206
Histone deacetylase complex protein.
   
 0.526
Your Current Organism:
Laccaria bicolor
NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.