B0CUJ7_LACBS protein (Laccaria bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0CUJ7_LACBS

Predicted protein. (359 aa)

Predicted Functional Partners:

ECH-3

0.948

B0D7V2_LACBS

0.923

B0CUU3_LACBS

0.908

FAS-2

0.900

B0CQX5_LACBS

0.868

B0CUJ6_LACBS

0.711

B0DFG5_LACBS

0.478

B0CUZ4_LACBS

0.467

B0CZX7_LACBS

0.466

B0DJH6_LACBS

0.466

Your Current Organism:

Laccaria bicolor

NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0CQX5_LACBS	B0CUJ7_LACBS	B0CQX5	B0CUJ7	Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Predicted protein.	0.868
B0CQX5_LACBS	FAS-2	B0CQX5	B0D9Q1	Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	Fatty acid synthase.	0.800
B0CUJ6_LACBS	B0CUJ7_LACBS	B0CUJ6	B0CUJ7	Predicted protein.	Predicted protein.	0.711
B0CUJ7_LACBS	B0CQX5_LACBS	B0CUJ7	B0CQX5	Predicted protein.	Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.	0.868
B0CUJ7_LACBS	B0CUJ6_LACBS	B0CUJ7	B0CUJ6	Predicted protein.	Predicted protein.	0.711
B0CUJ7_LACBS	B0CUU3_LACBS	B0CUJ7	B0CUU3	Predicted protein.	Predicted protein.	0.908
B0CUJ7_LACBS	B0CUZ4_LACBS	B0CUJ7	B0CUZ4	Predicted protein.	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.467
B0CUJ7_LACBS	B0CZX7_LACBS	B0CUJ7	B0CZX7	Predicted protein.	Predicted protein; Belongs to the aldehyde dehydrogenase family.	0.466
B0CUJ7_LACBS	B0D7V2_LACBS	B0CUJ7	B0D7V2	Predicted protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.923
B0CUJ7_LACBS	B0DFG5_LACBS	B0CUJ7	B0DFG5	Predicted protein.	Predicted protein.	0.478
B0CUJ7_LACBS	B0DJH6_LACBS	B0CUJ7	B0DJH6	Predicted protein.	Predicted protein.	0.466
B0CUJ7_LACBS	ECH-3	B0CUJ7	B0D8U0	Predicted protein.	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.948
B0CUJ7_LACBS	FAS-2	B0CUJ7	B0D9Q1	Predicted protein.	Fatty acid synthase.	0.900
B0CUU3_LACBS	B0CUJ7_LACBS	B0CUU3	B0CUJ7	Predicted protein.	Predicted protein.	0.908
B0CUU3_LACBS	B0D7V2_LACBS	B0CUU3	B0D7V2	Predicted protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.927
B0CUU3_LACBS	B0DFG5_LACBS	B0CUU3	B0DFG5	Predicted protein.	Predicted protein.	0.543
B0CUU3_LACBS	ECH-3	B0CUU3	B0D8U0	Predicted protein.	Enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.939
B0CUZ4_LACBS	B0CUJ7_LACBS	B0CUZ4	B0CUJ7	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Predicted protein.	0.467
B0CUZ4_LACBS	B0CZX7_LACBS	B0CUZ4	B0CZX7	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Predicted protein; Belongs to the aldehyde dehydrogenase family.	0.476
B0CUZ4_LACBS	B0DFG5_LACBS	B0CUZ4	B0DFG5	Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Predicted protein.	0.443