B0DQF8_LACBS protein (Laccaria bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0DQF8_LACBS

Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (479 aa)

Predicted Functional Partners:

B0CVU1_LACBS

0.949

B0DRP0_LACBS

0.944

B0DZR5_LACBS

0.944

B0DDU1_LACBS

0.936

B0D7M8_LACBS

0.933

B0CV28_LACBS

0.932

B0DKN0_LACBS

0.928

B0D3H6_LACBS

0.927

B0DTG5_LACBS

0.927

B0CR39_LACBS

0.922

Your Current Organism:

Laccaria bicolor

NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0CR39_LACBS	B0DDU1_LACBS	B0CR39	B0DDU1	Methylmalonate-semialdehyde dehydrogenase.	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.900
B0CR39_LACBS	B0DKN0_LACBS	B0CR39	B0DKN0	Methylmalonate-semialdehyde dehydrogenase.	Predicted protein.	0.810
B0CR39_LACBS	B0DQF8_LACBS	B0CR39	B0DQF8	Methylmalonate-semialdehyde dehydrogenase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.922
B0CR39_LACBS	B0DRP0_LACBS	B0CR39	B0DRP0	Methylmalonate-semialdehyde dehydrogenase.	Acetyl-coenzyme A synthetase.	0.911
B0CV28_LACBS	B0DKN0_LACBS	B0CV28	B0DKN0	Predicted protein.	Predicted protein.	0.900
B0CV28_LACBS	B0DQF8_LACBS	B0CV28	B0DQF8	Predicted protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.932
B0CV28_LACBS	B0DRP0_LACBS	B0CV28	B0DRP0	Predicted protein.	Acetyl-coenzyme A synthetase.	0.917
B0CVU1_LACBS	B0DQF8_LACBS	B0CVU1	B0DQF8	Pyruvate decarboxylase THI3.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.949
B0CVU1_LACBS	B0DZR5_LACBS	B0CVU1	B0DZR5	Pyruvate decarboxylase THI3.	Pyruvate decarboxylase PDC2.	0.904
B0D3H6_LACBS	B0DDU1_LACBS	B0D3H6	B0DDU1	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.907
B0D3H6_LACBS	B0DQF8_LACBS	B0D3H6	B0DQF8	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.927
B0D3H6_LACBS	B0DTG5_LACBS	B0D3H6	B0DTG5	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.902
B0D7M8_LACBS	B0DQF8_LACBS	B0D7M8	B0DQF8	Amine oxidase.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.933
B0DDU1_LACBS	B0CR39_LACBS	B0DDU1	B0CR39	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Methylmalonate-semialdehyde dehydrogenase.	0.900
B0DDU1_LACBS	B0D3H6_LACBS	B0DDU1	B0D3H6	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.907
B0DDU1_LACBS	B0DQF8_LACBS	B0DDU1	B0DQF8	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.936
B0DDU1_LACBS	B0DTG5_LACBS	B0DDU1	B0DTG5	Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.907
B0DKN0_LACBS	B0CR39_LACBS	B0DKN0	B0CR39	Predicted protein.	Methylmalonate-semialdehyde dehydrogenase.	0.810
B0DKN0_LACBS	B0CV28_LACBS	B0DKN0	B0CV28	Predicted protein.	Predicted protein.	0.900
B0DKN0_LACBS	B0DQF8_LACBS	B0DKN0	B0DQF8	Predicted protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.928