B0DWG0_LACBS protein (Laccaria bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0DWG0_LACBS

Predicted protein. (474 aa)

Predicted Functional Partners:

B0CQI8_LACBS

0.628

B0D8L6_LACBS

0.628

B0D0X9_LACBS

0.561

B0CV31_LACBS

0.552

B0D1L6_LACBS

0.552

B0CTZ3_LACBS

0.551

B0CVI9_LACBS

0.519

B0CSN1_LACBS

0.503

B0D020_LACBS

0.503

B0D9S8_LACBS

0.468

Your Current Organism:

Laccaria bicolor

NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0CQI8_LACBS	B0D1L6_LACBS	B0CQI8	B0D1L6	Predicted protein; Belongs to the cytochrome b5 family.	Malate synthase; Belongs to the malate synthase family.	0.745
B0CQI8_LACBS	B0D8L6_LACBS	B0CQI8	B0D8L6	Predicted protein; Belongs to the cytochrome b5 family.	Predicted protein.	0.910
B0CQI8_LACBS	B0DWG0_LACBS	B0CQI8	B0DWG0	Predicted protein; Belongs to the cytochrome b5 family.	Predicted protein.	0.628
B0CSN1_LACBS	B0CVI9_LACBS	B0CSN1	B0CVI9	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.720
B0CSN1_LACBS	B0D9S8_LACBS	B0CSN1	B0D9S8	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Predicted protein.	0.722
B0CSN1_LACBS	B0DWG0_LACBS	B0CSN1	B0DWG0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Predicted protein.	0.503
B0CTZ3_LACBS	B0DWG0_LACBS	B0CTZ3	B0DWG0	Predicted protein.	Predicted protein.	0.551
B0CV31_LACBS	B0CVI9_LACBS	B0CV31	B0CVI9	Predicted protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.611
B0CV31_LACBS	B0D0X9_LACBS	B0CV31	B0D0X9	Predicted protein.	Predicted protein.	0.999
B0CV31_LACBS	B0DWG0_LACBS	B0CV31	B0DWG0	Predicted protein.	Predicted protein.	0.552
B0CVI9_LACBS	B0CSN1_LACBS	B0CVI9	B0CSN1	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.720
B0CVI9_LACBS	B0CV31_LACBS	B0CVI9	B0CV31	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Predicted protein.	0.611
B0CVI9_LACBS	B0D020_LACBS	B0CVI9	B0D020	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Predicted protein.	0.594
B0CVI9_LACBS	B0D0X9_LACBS	B0CVI9	B0D0X9	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Predicted protein.	0.752
B0CVI9_LACBS	B0D1L6_LACBS	B0CVI9	B0D1L6	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Malate synthase; Belongs to the malate synthase family.	0.834
B0CVI9_LACBS	B0D9S8_LACBS	B0CVI9	B0D9S8	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Predicted protein.	0.968
B0CVI9_LACBS	B0DWG0_LACBS	B0CVI9	B0DWG0	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Predicted protein.	0.519
B0D020_LACBS	B0CVI9_LACBS	B0D020	B0CVI9	Predicted protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.594
B0D020_LACBS	B0D9S8_LACBS	B0D020	B0D9S8	Predicted protein.	Predicted protein.	0.722
B0D020_LACBS	B0DWG0_LACBS	B0D020	B0DWG0	Predicted protein.	Predicted protein.	0.503