B0CPS5_LACBS protein (Laccaria bicolor) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0CPS5_LACBS

DNA ligase. (816 aa)

Predicted Functional Partners:

B0DAZ4_LACBS

0.998

B0D3I9_LACBS

0.948

B0CP56_LACBS

0.941

B0DDS4_LACBS

0.923

B0DWP2_LACBS

0.914

B0D3W2_LACBS

0.907

B0D5V1_LACBS

0.874

B0CTY3_LACBS

0.864

B0DKM0_LACBS

0.856

B0CVK1_LACBS

0.851

Your Current Organism:

Laccaria bicolor

NCBI taxonomy Id: 486041
Other names: L. bicolor S238N-H82, Laccaria bicolor S238N-H82

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0CP56_LACBS	B0CPS5_LACBS	B0CP56	B0CPS5	DNA helicase; Belongs to the MCM family.	DNA ligase.	0.941
B0CP56_LACBS	B0CTY3_LACBS	B0CP56	B0CTY3	DNA helicase; Belongs to the MCM family.	Predicted protein.	0.889
B0CP56_LACBS	B0CVK1_LACBS	B0CP56	B0CVK1	DNA helicase; Belongs to the MCM family.	Predicted protein.	0.956
B0CP56_LACBS	B0D3I9_LACBS	B0CP56	B0D3I9	DNA helicase; Belongs to the MCM family.	Predicted protein.	0.893
B0CP56_LACBS	B0D5V1_LACBS	B0CP56	B0D5V1	DNA helicase; Belongs to the MCM family.	Predicted protein.	0.890
B0CP56_LACBS	B0DAZ4_LACBS	B0CP56	B0DAZ4	DNA helicase; Belongs to the MCM family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.891
B0CP56_LACBS	B0DDS4_LACBS	B0CP56	B0DDS4	DNA helicase; Belongs to the MCM family.	Predicted protein.	0.550
B0CP56_LACBS	B0DKM0_LACBS	B0CP56	B0DKM0	DNA helicase; Belongs to the MCM family.	Replication factor C subunit 1.	0.504
B0CP56_LACBS	B0DWP2_LACBS	B0CP56	B0DWP2	DNA helicase; Belongs to the MCM family.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.993
B0CPS5_LACBS	B0CP56_LACBS	B0CPS5	B0CP56	DNA ligase.	DNA helicase; Belongs to the MCM family.	0.941
B0CPS5_LACBS	B0CTY3_LACBS	B0CPS5	B0CTY3	DNA ligase.	Predicted protein.	0.864
B0CPS5_LACBS	B0CVK1_LACBS	B0CPS5	B0CVK1	DNA ligase.	Predicted protein.	0.851
B0CPS5_LACBS	B0D3I9_LACBS	B0CPS5	B0D3I9	DNA ligase.	Predicted protein.	0.948
B0CPS5_LACBS	B0D3W2_LACBS	B0CPS5	B0D3W2	DNA ligase.	Predicted protein.	0.907
B0CPS5_LACBS	B0D5V1_LACBS	B0CPS5	B0D5V1	DNA ligase.	Predicted protein.	0.874
B0CPS5_LACBS	B0DAZ4_LACBS	B0CPS5	B0DAZ4	DNA ligase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.998
B0CPS5_LACBS	B0DDS4_LACBS	B0CPS5	B0DDS4	DNA ligase.	Predicted protein.	0.923
B0CPS5_LACBS	B0DKM0_LACBS	B0CPS5	B0DKM0	DNA ligase.	Replication factor C subunit 1.	0.856
B0CPS5_LACBS	B0DWP2_LACBS	B0CPS5	B0DWP2	DNA ligase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.914
B0CTY3_LACBS	B0CP56_LACBS	B0CTY3	B0CP56	Predicted protein.	DNA helicase; Belongs to the MCM family.	0.889