Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOD13537.1Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
AOD13538.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.997
AOD13539.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.995
AOD13540.1
Phage major capsid protein, P2 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
AOD13541.1
Terminase; gpM; M protein; capsid packaging; M protein is probably the endonuclease subunit of the terminase complex, which directs cos cleavage of closed monomeric dsDNA circles into linear genomes with 19 nt cohesive ssDNA ends; Q, P and M proteins are needed to package DNA into capsid proheads and conversion into mature capsids; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.994
AOD13542.1
Head completion/stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.993
AOD13547.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.990
AOD13548.1
Phage virion morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.989
AOD13558.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.989
AOD13543.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.988
AOD13556.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.988
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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