AOD13552.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13543.1	AOD13547.1	BER92_00800	BER92_00825	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOD13543.1	AOD13549.1	BER92_00800	BER92_00840	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOD13543.1	AOD13552.1	BER92_00800	BER92_00855	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOD13543.1	AOD13553.1	BER92_00800	BER92_00860	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOD13543.1	AOD13554.1	BER92_00800	BER92_00865	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOD13543.1	AOD13555.1	BER92_00800	BER92_00870	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage major tail tube protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AOD13543.1	AOD13556.1	BER92_00800	BER92_00875	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AOD13543.1	AOD13557.1	BER92_00800	BER92_00880	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
AOD13543.1	AOD13558.1	BER92_00800	BER92_00885	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOD13543.1	AOD16433.1	BER92_00800	BER92_00835	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOD13547.1	AOD13543.1	BER92_00825	BER92_00800	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AOD13547.1	AOD13549.1	BER92_00825	BER92_00840	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
AOD13547.1	AOD13552.1	BER92_00825	BER92_00855	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AOD13547.1	AOD13553.1	BER92_00825	BER92_00860	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AOD13547.1	AOD13554.1	BER92_00825	BER92_00865	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
AOD13547.1	AOD13555.1	BER92_00825	BER92_00870	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage major tail tube protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
AOD13547.1	AOD13556.1	BER92_00825	BER92_00875	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AOD13547.1	AOD13557.1	BER92_00825	BER92_00880	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
AOD13547.1	AOD13558.1	BER92_00825	BER92_00885	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOD13547.1	AOD16433.1	BER92_00825	BER92_00835	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897