AOD13571.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13549.1	AOD13553.1	BER92_00840	BER92_00860	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOD13549.1	AOD13554.1	BER92_00840	BER92_00865	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD13549.1	AOD13571.1	BER92_00840	BER92_00995	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AOD13553.1	AOD13549.1	BER92_00860	BER92_00840	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOD13553.1	AOD13554.1	BER92_00860	BER92_00865	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD13553.1	AOD13571.1	BER92_00860	BER92_00995	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AOD13554.1	AOD13549.1	BER92_00865	BER92_00840	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD13554.1	AOD13553.1	BER92_00865	BER92_00860	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD13554.1	AOD13571.1	BER92_00865	BER92_00995	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AOD13571.1	AOD13549.1	BER92_00995	BER92_00840	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AOD13571.1	AOD13553.1	BER92_00995	BER92_00860	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AOD13571.1	AOD13554.1	BER92_00995	BER92_00865	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AOD13571.1	AOD13984.1	BER92_00995	BER92_03640	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AOD13571.1	AOD13985.1	BER92_00995	BER92_03645	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AOD13571.1	AOD13986.1	BER92_00995	BER92_03650	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AOD13571.1	AOD15619.1	BER92_00995	BER92_13975	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AOD13571.1	AOD15631.1	BER92_00995	BER92_14055	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AOD13571.1	pilM	BER92_00995	BER92_03635	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
AOD13571.1	pilQ	BER92_00995	BER92_03655	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
AOD13984.1	AOD13571.1	BER92_03640	BER92_00995	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879