Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOD13579.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (916 aa)    
Predicted Functional Partners:
AOD16633.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.634
AOD16666.1
Peptidase M61; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
oar
Oar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
AOD13580.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
AOD13581.1
Pathogenicity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
AOD16420.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.492
BER92_11150
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.476
AOD13772.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.469
AOD15697.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
entF
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.454
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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