Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pldOxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)    
Predicted Functional Partners:
AOD13592.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
AOD16341.1
L-fucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.922
AOD13591.1
NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.835
AOD14713.1
Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.831
AOD13589.1
Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.633
AOD13590.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.563
dkgB
2,5-didehydrogluconate reductase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.509
AOD16520.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.428
tcsR
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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