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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOD13678.1Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
AOD16454.1
Fatty acyl CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.953
AOD13677.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.951
AOD13674.1
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.947
AOD13679.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.939
AOD13680.1
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.925
fixC
Hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.854
AOD16453.1
AMP-ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
AOD13684.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.801
AOD13672.1
Pteridine-dependent deoxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
fabF_1
Beta-ketoacyl-[acyl-carrier-protein] synthase II; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
    0.781
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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