Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOD16469.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
AOD14600.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
AOD16494.1
Pilus assembly protein PilG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.740
pilL
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.703
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.689
AOD15604.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.688
AOD16488.1
PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.570
AOD14066.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
AOD16286.1
Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.561
pilI
Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.551
AOD14064.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.549
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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