cebR protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cebR	celD	BER92_03155	BER92_10775	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	1,4-beta-D-glucan glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
cebR	entF	BER92_03155	BER92_18470	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
cebR	fabG_2	BER92_03155	BER92_03160	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-ketoacyl-ACP reductase; Catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
cebR	fruB	BER92_03155	BER92_12550	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoenolpyruvate--protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
cebR	fyuA	BER92_03155	BER92_03145	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
cebR	gltB	BER92_03155	BER92_18910	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
cebR	guaA_1	BER92_03155	BER92_09090	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine-hydrolyzing GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.406
cebR	suc1	BER92_03155	BER92_03150	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
cebR	tctE	BER92_03155	BER92_03180	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
celD	cebR	BER92_10775	BER92_03155	1,4-beta-D-glucan glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
entF	cebR	BER92_18470	BER92_03155	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
entF	fabG_2	BER92_18470	BER92_03160	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-ketoacyl-ACP reductase; Catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
entF	gltB	BER92_18470	BER92_18910	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
entF	tctE	BER92_18470	BER92_03180	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
fabG_2	cebR	BER92_03160	BER92_03155	beta-ketoacyl-ACP reductase; Catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
fabG_2	entF	BER92_03160	BER92_18470	beta-ketoacyl-ACP reductase; Catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
fruB	cebR	BER92_12550	BER92_03155	Phosphoenolpyruvate--protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
fyuA	cebR	BER92_03145	BER92_03155	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
fyuA	suc1	BER92_03145	BER92_03150	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
gltB	cebR	BER92_18910	BER92_03155	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801