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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BER92_03225Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (881 aa)    
Predicted Functional Partners:
AOD13908.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.734
tcsR
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.728
BER92_01095
NdvB protein; Internal stop; incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.697
AOD14603.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.660
AOD15268.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.542
flgD
Flagellar basal body rod modification protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.515
AOD13596.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
oprO
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
AOD14345.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.475
AOD14047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.463
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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