STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprOPorin; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)    
Predicted Functional Partners:
BER92_12300
2'-5' RNA ligase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
AOD16492.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
dctA
C4-dicarboxylate transporter DctA; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.520
AOD16213.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
xpsM
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
AOD14845.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
AOD15183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.480
BER92_03225
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
AOD15822.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
AOD14165.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.