AOD14087.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

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co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD14084.1	AOD14086.1	BER92_04295	BER92_04305	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AOD14084.1	AOD14087.1	BER92_04295	BER92_04310	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AOD14084.1	AOD14511.1	BER92_04295	BER92_06900	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614
AOD14084.1	ftsQ	BER92_04295	BER92_03790	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.	0.590
AOD14084.1	ostA	BER92_04295	BER92_04750	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.	0.573
AOD14084.1	pepA	BER92_04295	BER92_04300	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.770
AOD14086.1	AOD14084.1	BER92_04305	BER92_04295	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AOD14086.1	AOD14087.1	BER92_04305	BER92_04310	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD14086.1	AOD15572.1	BER92_04305	BER92_13665	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AOD14086.1	ftsQ	BER92_04305	BER92_03790	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.	0.494
AOD14086.1	lptC	BER92_04305	BER92_13655	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter periplasmic protein LptC; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.	0.958
AOD14086.1	lpxH	BER92_04305	BER92_15335	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-2,3-diacylglucosamine diphosphatase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.	0.456
AOD14086.1	ostA	BER92_04305	BER92_04750	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.	0.832
AOD14086.1	pepA	BER92_04305	BER92_04300	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.713
AOD14087.1	AOD14084.1	BER92_04310	BER92_04295	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AOD14087.1	AOD14086.1	BER92_04310	BER92_04305	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AOD14087.1	AOD14511.1	BER92_04310	BER92_06900	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	ClpXP protease specificity-enhancing factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
AOD14087.1	AOD15572.1	BER92_04310	BER92_13665	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AOD14087.1	ftsQ	BER92_04310	BER92_03790	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.	0.642
AOD14087.1	lptA	BER92_04310	BER92_13660	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.	0.636