Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOD14123.1D-galactose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)    
Predicted Functional Partners:
galM
Phage tail protein; Converts alpha-aldose to the beta-anomer.
  
 
 0.905
bga2
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.903
dgoK
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.721
AOD15166.1
Regucalcin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.688
lysS
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.579
AOD14399.1
Ketoglutarate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.476
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.430
AOD15359.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
AOD13907.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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