STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOD14132.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
AOD14133.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AOD14130.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.553
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family.
       0.553
AOD14375.1
GDP-mannose--glycolipid 4-beta-D-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
BER92_05650
Short-chain dehydrogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.419
BER92_01095
NdvB protein; Internal stop; incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.405
BER92_17425
Malonate decarboxylase subunit alpha; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.400
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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