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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOD14176.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)    
Predicted Functional Partners:
AOD14175.1
tRNA-specific adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.819
rlmM
23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
       0.726
AOD14989.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.643
glnS
glutamine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
evpA
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.417
evpB
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.403
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.