node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AOD14479.1 | AOD14480.1 | BER92_06715 | BER92_06720 | Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
AOD14479.1 | dnaB | BER92_06715 | BER92_06710 | Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.549 |
AOD14480.1 | AOD14479.1 | BER92_06720 | BER92_06715 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. | 0.450 |
AOD14480.1 | AOD16112.1 | BER92_06720 | BER92_17245 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.479 |
AOD14480.1 | dnaB | BER92_06720 | BER92_06710 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.444 |
AOD14480.1 | rplN | BER92_06720 | BER92_05215 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.401 |
AOD14480.1 | rplR | BER92_06720 | BER92_05245 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.401 |
AOD14480.1 | rpsB | BER92_06720 | BER92_06440 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. | 0.402 |
AOD14480.1 | rpsF | BER92_06720 | BER92_08445 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.466 |
AOD14480.1 | rpsL | BER92_06720 | BER92_05140 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.422 |
AOD14480.1 | rpsN | BER92_06720 | BER92_05230 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.404 |
AOD14480.1 | tolB | BER92_06720 | BER92_14435 | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.713 |
AOD16112.1 | AOD14480.1 | BER92_17245 | BER92_06720 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.479 |
dnaB | AOD14479.1 | BER92_06710 | BER92_06715 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family. | 0.549 |
dnaB | AOD14480.1 | BER92_06710 | BER92_06720 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.444 |
rplN | AOD14480.1 | BER92_05215 | BER92_06720 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.401 |
rplN | rplR | BER92_05215 | BER92_05245 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplN | rpsB | BER92_05215 | BER92_06440 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. | 0.996 |
rplN | rpsF | BER92_05215 | BER92_08445 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.995 |
rplN | rpsL | BER92_05215 | BER92_05140 | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.998 |