recO protein (Xanthomonas fragariae) - STRING interaction network

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recO

DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa)

Predicted Functional Partners:

recR

0.920

era

0.824

rnc

0.801

AOD14504.1

0.754

AOD14521.1

0.748

rumA

0.705

polA

0.695

AOD13659.1

0.694

recX

0.691

AOD14520.1

0.678

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13659.1	recO	BER92_01585	BER92_06985	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.694
AOD14504.1	era	BER92_06865	BER92_06980	Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.619
AOD14504.1	recO	BER92_06865	BER92_06985	Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.754
AOD14520.1	AOD14521.1	BER92_06965	BER92_06970	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AOD14520.1	era	BER92_06965	BER92_06980	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.827
AOD14520.1	recO	BER92_06965	BER92_06985	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.678
AOD14520.1	rnc	BER92_06965	BER92_06975	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.936
AOD14521.1	AOD14520.1	BER92_06970	BER92_06965	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	0.814
AOD14521.1	era	BER92_06970	BER92_06980	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	0.850
AOD14521.1	recO	BER92_06970	BER92_06985	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.748
AOD14521.1	rnc	BER92_06970	BER92_06975	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.897
AOD14521.1	rumA	BER92_06970	BER92_06995	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (uracil(1939)-C(5))-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.537
era	AOD14504.1	BER92_06980	BER92_06865	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
era	AOD14520.1	BER92_06980	BER92_06965	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Signal peptidase I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.	0.827
era	AOD14521.1	BER92_06980	BER92_06970	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	DUF4845 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
era	recO	BER92_06980	BER92_06985	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.824
era	rnc	BER92_06980	BER92_06975	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.915
era	rumA	BER92_06980	BER92_06995	GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.	23S rRNA (uracil(1939)-C(5))-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.	0.481
polA	recO	BER92_01640	BER92_06985	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.	0.695
polA	recR	BER92_01640	BER92_14075	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.568