Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AOD14546.1DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (57 aa)    
Predicted Functional Partners:
osmY
BON domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.679
AOD16227.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.594
AOD15143.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.582
AOD15608.1
Bacterioferritin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.573
AOD13697.1
Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
AOD13725.1
Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AOD15023.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
AOD13698.1
Thiol reductase thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
AOD16249.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.493
BER92_12300
2'-5' RNA ligase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.487
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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