Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOD14598.1Oar protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1075 aa)    
Predicted Functional Partners:
AOD16452.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
AOD13447.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.710
AOD14599.1
LOG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.680
AOD15612.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
AOD14408.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.633
AOD14410.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
AOD13521.1
Energy transducer TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.579
AOD15701.1
Ferric enterobactin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.560
BER92_14535
Glyoxalase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.559
AOD16700.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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