Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AOD14685.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)    
Predicted Functional Partners:
AOD14684.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.976
AOD14683.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.961
AOD13892.1
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.845
AOD14686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.723
BER92_09530
Chemotaxis protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.613
AOD13702.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
BER92_17425
Malonate decarboxylase subunit alpha; Frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.544
AOD13922.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.534
rpfN
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AOD14452.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.502
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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