STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOD14696.1Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (49 aa)    
Predicted Functional Partners:
BER92_08075
Transposase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.723
AOD14697.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.557
AOD14081.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.516
AOD13910.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.507
AOD15008.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.497
AOD14698.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.494
AOD14879.1
Transposase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.485
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.