Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AOD14719.1Acetylhydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (477 aa)    
Predicted Functional Partners:
engXCA
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.794
AOD15157.1
9-O-acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
AOD16456.1
Avirulence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.574
AOD15832.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
AOD15315.1
Polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.487
BER92_11080
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.485
AOD15420.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.470
AOD14444.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.465
BER92_13795
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.463
celD
1,4-beta-D-glucan glucohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.458
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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