AOD14741.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13660.1	AOD14741.1	BER92_01595	BER92_08330	beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AOD13660.1	nagZ	BER92_01595	BER92_07015	beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.	0.517
AOD14096.1	AOD14098.1	BER92_04370	BER92_04380	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AOD14096.1	AOD14741.1	BER92_04370	BER92_08330	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOD14096.1	xpsM	BER92_04370	BER92_04395	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
AOD14098.1	AOD14096.1	BER92_04380	BER92_04370	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AOD14098.1	AOD14741.1	BER92_04380	BER92_08330	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AOD14098.1	xpsM	BER92_04380	BER92_04395	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AOD14741.1	AOD13660.1	BER92_08330	BER92_01595	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AOD14741.1	AOD14096.1	BER92_08330	BER92_04370	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
AOD14741.1	AOD14098.1	BER92_08330	BER92_04380	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AOD14741.1	AOD14742.1	BER92_08330	BER92_08335	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AOD14741.1	AOD14743.1	BER92_08330	BER92_08340	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AOD14741.1	AOD15415.1	BER92_08330	BER92_12600	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine 6-aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.596
AOD14741.1	AOD15525.1	BER92_08330	BER92_13380	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AOD14741.1	AOD15774.1	BER92_08330	BER92_14995	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AOD14741.1	nagZ	BER92_08330	BER92_07015	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	beta-N-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.	0.629
AOD14741.1	xpsM	BER92_08330	BER92_04395	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
AOD14742.1	AOD14741.1	BER92_08335	BER92_08330	Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
AOD14742.1	AOD14743.1	BER92_08335	BER92_08340	Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789