Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
BER92_08650Heme ABC transporter permease; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
rpoE4
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.866
AOD14797.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.792
BER92_10545
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.737
AOD14799.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
BER92_11950
acyl-CoA thioesterase; Frameshifted; incomplete; partial on complete genome; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.502
gumG
Polysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.499
xopAE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.497
AOD15832.1
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.447
gumF
Polysaccharide biosynthesis protein GumF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
AOD14669.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.406
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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