metX protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13932.1	AOD16175.1	BER92_03325	BER92_17705	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AOD13932.1	AOD16218.1	BER92_03325	BER92_18010	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AOD13932.1	cysB	BER92_03325	BER92_15700	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AOD13932.1	metA2	BER92_03325	BER92_05825	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.	0.819
AOD13932.1	metAA	BER92_03325	BER92_18030	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.	0.808
AOD13932.1	metB	BER92_03325	BER92_05830	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-succinylhomoserine (thiol)-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
AOD13932.1	metX	BER92_03325	BER92_08835	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Transfers a succinyl group from succinyl-CoA to L-serine, forming succinyl-L-serine.	0.825
AOD13932.1	thrA	BER92_03325	BER92_10610	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.587
AOD13932.1	thrB	BER92_03325	BER92_10605	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.479
AOD14338.1	AOD16218.1	BER92_05835	BER92_18010	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
AOD14338.1	cysB	BER92_05835	BER92_15700	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AOD14338.1	metA2	BER92_05835	BER92_05825	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine acetyltransferase; Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.	0.984
AOD14338.1	metAA	BER92_05835	BER92_18030	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.	0.936
AOD14338.1	metB	BER92_05835	BER92_05830	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-succinylhomoserine (thiol)-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AOD14338.1	metX	BER92_05835	BER92_08835	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Transfers a succinyl group from succinyl-CoA to L-serine, forming succinyl-L-serine.	0.955
AOD14338.1	thrA	BER92_05835	BER92_10610	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Bifunctional aspartate kinase/homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology; In the C-terminal section; belongs to the homoserine dehydrogenase family.	0.963
AOD14338.1	thrB	BER92_05835	BER92_10605	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.992
AOD16175.1	AOD13932.1	BER92_17705	BER92_03325	Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
AOD16175.1	AOD16218.1	BER92_17705	BER92_18010	Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AOD16175.1	cysB	BER92_17705	BER92_15700	Serine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919