Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BER92_09415RpfH protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (729 aa)    
Predicted Functional Partners:
rpfG
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.973
rpfF
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.938
AOD14925.1
long-chain-fatty-acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.936
cheR4
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.904
AOD16035.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.816
AOD16409.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.744
AOD14602.1
Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.675
AOD14603.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.662
AOD15268.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.640
pilL
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.523
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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