Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOD14928.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)    
Predicted Functional Partners:
AOD14927.1
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.851
acnB
Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aconitase/IPM isomerase family.
     
 0.782
AOD16390.1
Plasmid stabilization protein ParE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.688
AOD16213.1
Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
AOD14967.1
Transmembrane repetitive protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.621
AOD16564.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.582
AOD16561.1
Coagulation factor 5/8 type domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
acnA
Hypothetical protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.551
AOD14414.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
AOD13938.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.531
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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