Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
clpVClpV1 family T6SS ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (912 aa)    
Predicted Functional Partners:
evpF
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.934
AOD14989.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.932
AOD14991.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.900
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
 0.876
AOD14986.1
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.869
AOD14992.1
Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.869
evpA
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.858
evpB
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.857
clpS
ATP-dependent Clp protease adapter ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
 
 0.849
impJ
Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.833
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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