AOD16578.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD14989.1	AOD14992.1	BER92_09835	BER92_09850	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOD14989.1	AOD14995.1	BER92_09835	BER92_09870	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
AOD14989.1	AOD14997.1	BER92_09835	BER92_09880	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AOD14989.1	AOD15218.1	BER92_09835	BER92_11340	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
AOD14989.1	AOD15219.1	BER92_09835	BER92_11345	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein VasK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
AOD14989.1	AOD16578.1	BER92_09835	BER92_09885	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
AOD14989.1	evpA	BER92_09835	BER92_09860	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AOD14989.1	evpB	BER92_09835	BER92_09855	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AOD14989.1	evpF	BER92_09835	BER92_09840	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AOD14989.1	impJ	BER92_09835	BER92_09875	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AOD14992.1	AOD14989.1	BER92_09850	BER92_09835	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOD14992.1	AOD14995.1	BER92_09850	BER92_09870	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AOD14992.1	AOD14997.1	BER92_09850	BER92_09880	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AOD14992.1	AOD15218.1	BER92_09850	BER92_11340	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
AOD14992.1	AOD15219.1	BER92_09850	BER92_11345	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein VasK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
AOD14992.1	AOD16578.1	BER92_09850	BER92_09885	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AOD14992.1	evpA	BER92_09850	BER92_09860	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AOD14992.1	evpB	BER92_09850	BER92_09855	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AOD14992.1	evpF	BER92_09850	BER92_09840	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOD14992.1	impJ	BER92_09850	BER92_09875	Hcp family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879