Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AOD15023.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (892 aa)    
Predicted Functional Partners:
AOD15612.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.687
BER92_16605
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
AOD14408.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
AOD13995.1
Plasmid maintenance protein CcdB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
fyuA
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.592
AOD13996.1
Plasmid maintenance protein CcdB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
AOD14410.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.578
AOD14546.1
DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.514
phuR_2
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
BER92_14535
Glyoxalase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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