AOD15039.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

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co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD13723.1	AOD15039.1	BER92_01990	BER92_10150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AOD15039.1	AOD13723.1	BER92_10150	BER92_01990	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
AOD15039.1	BER92_00655	BER92_10150	BER92_00655	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	0.411
AOD15039.1	aat	BER92_10150	BER92_10155	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	0.606
AOD15039.1	bpt	BER92_10150	BER92_14910	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.	0.524
AOD15039.1	ftsK	BER92_10150	BER92_10140	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
AOD15039.1	infA	BER92_10150	BER92_10160	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.476
AOD15039.1	trxB	BER92_10150	BER92_10145	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
BER92_00655	AOD15039.1	BER92_00655	BER92_10150	TonB-dependent receptor; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
aat	AOD15039.1	BER92_10155	BER92_10150	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
aat	bpt	BER92_10155	BER92_14910	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.	0.423
aat	ftsK	BER92_10155	BER92_10140	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
aat	infA	BER92_10155	BER92_10160	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.728
aat	trxB	BER92_10155	BER92_10145	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
bpt	AOD15039.1	BER92_14910	BER92_10150	Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
bpt	aat	BER92_14910	BER92_10155	Arginyltransferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	0.423
ftsK	AOD15039.1	BER92_10140	BER92_10150	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
ftsK	aat	BER92_10140	BER92_10155	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.	0.531
ftsK	infA	BER92_10140	BER92_10160	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.512
ftsK	trxB	BER92_10140	BER92_10145	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572