Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOD15156.1Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)    
Predicted Functional Partners:
AOD15155.1
Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.903
AOD15157.1
9-O-acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.893
AOD15158.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.827
AOD16592.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.754
AOD15420.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.606
AOD13840.1
Endopolygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
  
     0.599
AOD13717.1
Carotenoid oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
AOD15315.1
Polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
  
     0.507
AOD16719.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
xylE
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
     0.442
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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