AOD15242.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD14062.1	AOD15242.1	BER92_04155	BER92_11510	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
AOD14062.1	exbB_1	BER92_04155	BER92_00050	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AOD14062.1	exbB_2	BER92_04155	BER92_11515	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.937
AOD14062.1	tolQ	BER92_04155	BER92_14450	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.618
AOD15242.1	AOD14062.1	BER92_11510	BER92_04155	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
AOD15242.1	AOD15399.1	BER92_11510	BER92_12515	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AOD15242.1	AOD16420.1	BER92_11510	BER92_00045	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AOD15242.1	comA	BER92_11510	BER92_11520	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA internalization-related competence protein ComEC/Rec2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AOD15242.1	exbB_1	BER92_11510	BER92_00050	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
AOD15242.1	exbB_2	BER92_11510	BER92_11515	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AOD15242.1	kdsB	BER92_11510	BER92_11495	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphotyrosine protein phosphatase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.	0.691
AOD15242.1	lpxK	BER92_11510	BER92_11500	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.894
AOD15242.1	msbA	BER92_11510	BER92_11505	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.863
AOD15242.1	tolQ	BER92_11510	BER92_14450	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.908
AOD15399.1	AOD15242.1	BER92_12515	BER92_11510	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AOD15399.1	exbB_1	BER92_12515	BER92_00050	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AOD15399.1	exbB_2	BER92_12515	BER92_11515	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
AOD15399.1	tolQ	BER92_12515	BER92_14450	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.683
AOD16420.1	AOD15242.1	BER92_00045	BER92_11510	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AOD16420.1	exbB_1	BER92_00045	BER92_00050	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971