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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpD6Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)    
Predicted Functional Partners:
AOD15469.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.809
AOD15467.1
EscS/YscS/HrcS family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.803
hrcR
EscR/YscR/HrcR family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.763
AOD16631.1
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.751
hpaB
4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.725
AOD15468.1
4-hydroxyphenylacetate catabolism regulator HpaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
AOD15464.1
EscV/YscV/HrcV family type III secretion system export apparatus protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.665
AOD15471.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.559
AOD15463.1
EscU/YscU/HrcU family type III secretion system export apparatus switch protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.557
AOD15462.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.553
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.