STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOD15584.1Type IV secretion system protein VirD4; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)    
Predicted Functional Partners:
AOD14290.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.906
AOD15138.1
Type IV secretion system protein VirD4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.901
AOD15583.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.868
BER92_07720
Type IV secretion system protein VirB9; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.854
AOD14640.1
P-type DNA transfer ATPase VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
   
 0.844
AOD14638.1
Conjugative transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.838
virB4_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.802
virB4_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.802
AOD16547.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.800
BER92_13730
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.