Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOD15881.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)    
Predicted Functional Partners:
AOD14207.1
Polyphosphate kinase 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.690
cysB
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
uptE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
AOD13970.1
YggW family oxidoreductase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
    0.424
AOD15883.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.420
Your Current Organism:
Xanthomonas fragariae
NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae
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