AOD16401.1 protein (Xanthomonas fragariae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AOD16401.1

Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)

Predicted Functional Partners:

yrbD

0.993

yrbF

0.992

AOD16400.1

0.992

AOD16398.1

0.985

AOD15851.1

0.964

AOD15850.1

0.929

AOD15852.1

0.889

vacJ

0.873

Your Current Organism:

Xanthomonas fragariae

NCBI taxonomy Id: 48664
Other names: ATCC 33239, CCUG 23372, CFBP 2157, DSM 3587, ICMP 5715, LMG 708, LMG:708, VKM B-2165, X. fragariae

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOD15850.1	AOD15851.1	BER92_15540	BER92_15545	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOD15850.1	AOD15852.1	BER92_15540	BER92_15550	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOD15850.1	AOD16398.1	BER92_15540	BER92_19205	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AOD15850.1	AOD16400.1	BER92_15540	BER92_19215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
AOD15850.1	AOD16401.1	BER92_15540	BER92_19220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AOD15850.1	yrbD	BER92_15540	BER92_19210	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOD15850.1	yrbF	BER92_15540	BER92_19200	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AOD15851.1	AOD15850.1	BER92_15545	BER92_15540	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AOD15851.1	AOD15852.1	BER92_15545	BER92_15550	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOD15851.1	AOD16398.1	BER92_15545	BER92_19205	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOD15851.1	AOD16400.1	BER92_15545	BER92_19215	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
AOD15851.1	AOD16401.1	BER92_15545	BER92_19220	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
AOD15851.1	yrbD	BER92_15545	BER92_19210	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AOD15851.1	yrbF	BER92_15545	BER92_19200	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AOD15852.1	AOD15850.1	BER92_15550	BER92_15540	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOD15852.1	AOD15851.1	BER92_15550	BER92_15545	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AOD15852.1	AOD16398.1	BER92_15550	BER92_19205	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AOD15852.1	AOD16400.1	BER92_15550	BER92_19215	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Organic solvent ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AOD15852.1	AOD16401.1	BER92_15550	BER92_19220	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
AOD15852.1	yrbD	BER92_15550	BER92_19210	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane lipid asymmetry maintenance protein MlaD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About