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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103129416Zinc finger protein 395a. (373 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.863
ENSPFOP00000017299
Uncharacterized protein; Belongs to the complex I LYR family.
    
 0.812
ENSPFOP00000009551
Heme-binding protein soul4.
    
 0.778
ENSPFOP00000017453
Uncharacterized protein.
    
 0.778
babam1
BRISC and BRCA1 A complex member 1.
    
 0.774
rag2
Recombination activating gene 2.
   
 0.772
rag2-2
Recombination activating 2.
   
 0.772
ENSPFOP00000005078
BRCA1 associated RING domain 1.
    
 0.770
LOC103139106
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.764
rpl21
Ribosomal protein L21.
   
   0.762
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.