Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rftn2Raftlin family member 2. (438 aa)    
Predicted Functional Partners:
arl6ip6
Uncharacterized protein.
      
 0.711
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.709
LOC103147658
Chloride intracellular channel 3.
      
 0.649
OTOP1
Otopetrin 1.
      
 0.584
LOC103154191
Serine dehydratase-like.
      
 0.498
ENSPFOP00000010742
A kinase (PRKA) anchor protein 6.
      
 0.498
SDS
Serine dehydratase.
      
 0.498
ENSPFOP00000003159
Motile sperm domain containing 2.
      
 0.494
LOC103134230
Motile sperm domain containing 2.
      
 0.494
ZNF503
Zinc finger protein 503.
      
 0.427
Your Current Organism:
Poecilia formosa
NCBI taxonomy Id: 48698
Other names: Amazon molly, Limia formosa, Mollienesia formosa, P. formosa
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